BOLT-LMM

BOLT-LMM/2.4: The software package currently consists of two main algorithms, the BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML algorithm for variance components analysis (i.e., partitioning of SNP-heritability and estimation of genetic correlations).

Link to homepage: https://alkesgroup.broadinstitute.org/BOLT-LMM/BOLT-LMM_manual.html#x1-50002