tetranscripts/2.2.1: TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. TEtranscripts then performs differential analysis using DESeq2.
Link to homepage: http://hammelllab.labsites.cshl.edu/software/#Tetranscripts
| Versions | Prerequisites |
|---|---|
| 2.2.1 | anaconda3/2021.11 |